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The IGV genome server hosts several genomes. See the section on loading genomes for instructions.
Hosted assemblies
As of July 15, 2021. See acknowldegments below.
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A. gambia (Pest AgamP3)
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A. nidulans (4.1)
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A. thaliana (TAIR 10)
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Autographa californica MNPV
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Bacillus Subtilis str. 168
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Banana (M. Balbisiana PKWv1)
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Banana (Musa acuminata)
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C. alibcans (SC5314 A21)
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C. elegans (ce10)
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C. elegans (ce11)
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C. elegans (WS235)
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C. elegans (WS241)
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C. elegans (WS245)
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C. reinhardtii (CC-503 v5.5)
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C. reinhardtii (CC-503 v5.6)
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C. reinhardtii (CC-503 v5.6 Cp+Mt v4.4)
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Cat (felCat5)
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Chicken (galGal4)
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Chicken (galGal5)
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Chicken (GRCg6a / galGal6)
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Chimp (panTro3)
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Chimp (panTro4)
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Chimp (panTro5)
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Chimp (panTro6)
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Cow (bosTau7)
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Cow (bosTau8)
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D. melanogaster (dm3)
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D. melanogaster (dm6)
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D. melanogaster (r5.9)
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Dog (canFam3)
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Dog (canFam5)
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E. coli K-12 MG1655 (NC_000913.2)
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E. coli K-12 (NC_000913.3)
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Ferret (MusPutFur1.0)
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Francisella tularensis (NC_008601)
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Glycine max (v8.0)
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Glycine max (Wm82.a2.v1)
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Helicobacter hepaticus
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HIV-1
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HIV-2
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Human (1kg, b37+decoy)
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Human (b37)
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Human hg18
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Human hg19
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Human hg38
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Human hg38 (1kg/GATK)
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Human Mito (NC_012920)
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Human Adenovirus C
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Human Herpesvirus 4, Type 1
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Human Herpesvirus 4, Type 2
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Human respiratory synctial virus
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Ixodes scapularis JCVI_ISG_i3_1.0 (GCA_000208615.1)
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Ixodes scapularis ISE6_asm2.2_deduplicated (GCA_002892825.2)
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Macaca fascicularis (CE_1.0)
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Macaca fascicularis (5.0)
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Mouse (129S1/SvImJ)
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Mouse mm8
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Mouse mm9
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Mouse mm10
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Mouse mm39
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Mycobacterium TB (CD1551)
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N. Meningitidis (FAM18)
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N. Meningitidis (MC58)
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N. Meningitidis (Z2491)
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N. crassa OR74A (NC10)
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Neurospora crassa (v3)
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P. falciparum 3D7 (V9.0)
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Plasmodium (3D7 V24)
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Rabbit (oryCun2.0)
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Rat (rn5)
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Rat (rn6)
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Rat (rn7)
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Rhesus (rheMac3)
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Rhesus (rheMac8)
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Rhesus (Mmul_10/rheMac10)
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S. cerevisiae (sacCer3)
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S. cerevisiae (Y55)
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S. pombe (ASM294v2)
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S. sclerotiorum (sclerotiorum)
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S.purpuratus (2.1+)
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Salmo salar (ICSASG_v2)
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Salmonella enterica str. 14028S
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SARS-CoV-2 (ASM985889v3)
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Sheep (Ovis Aries v3.1)
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Sus Scrofa (Sscrofa10.2/susScr3)
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T. brucei (427 v4.2)
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T. brucei (927 v5.0)
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T. brucei gambiense
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Tomato (2.31)
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Tomato (2.40)
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Trout (CCAF000000000)
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V. vitifera
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X. laevis (7.1)
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X. tropicalis v9.0
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Zea mays (AGPv3.31
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Zebrafish (GRCz10/danRer10)
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Zebrafish (GRCz11/danRer11)
Acknowledgements
The IGV hosted assemblies came from the following sources.
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1000 Genomes www.1000genomes.org
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Arabidopsis Information Resource, www.arabidopsis.org
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Banana Genome Hub banana-genome-hub.southgreen.fr
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Broad Institute, Aplysia Genome Project, www.broadinstitute.org/aplysia/aplysia-genome-project
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Broad Institute, Magnaporthe Comparative Genomics Project www.broadinstitute.org/scientific-community/science/projects/fungal-genome-initiative/magnaporthe-comparative-genomics-proj
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Broad Institute, Neurospora Crass Genome Project, www.broadinstitute.org/fungal-genome-initiative/neurospora-crassa-genome-project
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Broad Institute, Aspergillus Comparative Sequencing Project, www.broadinstitute.org/fungal-genome-initiative/aspergillus-genome-projects
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Candida Genome Database, www.candidagenome.org
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Comprehensive Library for Modern Biotechnology (CLiMB), climb.genomics.cn/Macaca_fascicularis
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Dept of Energy Joint Genome Institute, genome.jgi-psf.org/Xentr4
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dictyBase, dictybase.org
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Ensembl, www.ensembl.org
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GiardiaDB, giardiadb.org/
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Human Sequencing Genome Center at Baylor University, www.hgsc.bcm.tmc.edu
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International Consortium for the Sequencing of Anopheles Genome, www.ncbi.nlm.nih.gov/assembly/305108/
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International Tomato Sequencing Project, http://solgenomics.net/organism/Solanum_lycopersicum/genome
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Maize Genome Sequencing Project, www.maizesequence.org
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NCBI, www.ncbi.nlm.nih.gov/genome
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Physcome Project, www.cosmoss.org
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Phytozome, www.phytozome.net
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PlasmoDB, plasmodb.org/plasmo
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Rice Genome Annotation Project, rice.plantbiology.msu.edu
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Saccharomyces Genome Database, www.yeastgenome.org
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Sidow Lab, Stanford, sidowlab.org
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SpBase, www.spbase.org
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Toxoplasma Genomics Resource (ToxoDB), toxodb.org/toxo
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TriTrypDB Kinetoplastid Genomics Resource, tritrypdb.org
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UC Santa Cruz Genome Bioinformatics, genome.ucsc.edu
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University of Maryland, www.cbcb.umd.edu/research/bos_taurus_assembly.shtml
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Wellcome Trust Sanger Institute, www.sanger.ac.uk/Projects
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WormBase, www.wormbase.org
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Plant Metabolism Group, University of Cambridge, https://data.plantsci.cam.ac.uk/PlantMet/index.php/genomes/
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Pellegrini and Merchant labs, UCLA, http://genomes.mcdb.ucla.edu/CreOrganelles/download.html
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