File |
Load from File |
Displays genomic data from one or more files. more... |
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Load from URL |
Displays genomic data from a file identified by URL. more... |
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Load from Server |
Displays genomic data from the IGV data server. more... |
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New Session |
Unloads all currently loaded data, as if you exited and restarted IGV. more... |
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Open Session |
Opens a previously saved session file. more... |
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Save Session |
Saves your current settings to a named session file. more... |
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Reload Session |
Reloads all the tracks in the current session.The viewing parameters and other settings remain the same. |
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Save Image |
Saves a snapshot of the IGV window to a graphics file, omitting the menu bar and tool bar. Specify the image file format by setting the filename extension in the file save dialog to .png or .svg. |
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Exit |
Closes IGV. |
Genomes |
Load Genome from File |
Loads a genome into IGV from your file system. |
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Load Genome from URL |
Loads a genome into IGV from a web URL. |
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Load Genome from Server |
Loads a genome into IGV from the IGV data server. more... |
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Remove Genomes |
Remove one or more genomes from the Genomes dropdown menu. The currently displayed reference genome cannot be removed. |
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Create .genome File |
A utility for creating an IGV .genome file that packages the sequence and optionally other attributes. |
View |
Preferences |
Opens a tabbed menu of data display preferences. more... |
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Color Legends |
Displays color legends for track data, which may be modified. more... |
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Show Name Panel |
Shows/hides the track name panel. |
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Set Name Panel Width |
Resets the track name panel width. |
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Show Attribute Display |
Shows/hides the sample/track attribute panel. more... |
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Select Attributes to Show |
Shows/hides selected individual attributes columns in the attribute panel. more... |
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Show Header Panel |
Shows/hides the panel with the chromosome location information and ruler. |
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Reorder Panels |
Allows the user to reorder the display panels in the IGV window. |
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Go to |
View and select loci visited in your navigation history. |
Tracks |
Sort Tracks |
Sorts track data. more... |
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Group Tracks |
Groups track data. more... |
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Filter Tracks |
Filters track data. more... |
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Fit Data to Window |
Sets the track height to display all of the data, or as much data as possible. more... |
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Set Track Height |
Sets the track height to a specified value. more... |
Regions |
Region Navigator |
Opens the region navigator. more... |
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Export Regions |
Saves currently defined regions of interest to a BED file. If no regions of interest are defined, no BED file is created. more...
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Import Regions |
Imports regions of interest from a BED file. more... |
Tools |
Run Batch Script |
Executes a series of sequential tasks. Users can load at .txt file that contains a list of commands, one per line, that will be run by IGV. The accepted commands are the same as the IGV Port Commands. |
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Run igvtools |
Launches the igvtools interface window. more... |
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Find Motif |
Search for a particular nucleotide sequence in the reference genome. more... |
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BLAT |
Run a BLAT search on an entered query sequence. more... |
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Combine Data Tracks |
Combine two selected numeric tracks to dynamically create a new track. Operators include add, subtract, multiply, and divide. For example, when multiplying two tracks, for a locus each with data values of 10 and 2 in the separate tracks will have a value of 20 in the new track. |
Help |
User Guide... |
Displays the IGV User Guide. |
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Help Forum... |
In your default web browser, opens the home page for the igv-help forum. |
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About IGV |
Displays IGV version and build number. |