Request: make possible to configure cromwell using brew wrapper script
open | Created 2018-02-12 | Last updated 2019-02-21| Posted by magicDGS | See in Github

Needs Triage User Requested Improvement

Currently, the configuration file should be passed as java -Dconfig.file=/path/to/your.conf cromwell.jar; neverhteless, if installed with the formula from homebrew-core, the wrapper script does not allow that configuration:

exec java  -jar /usr/local/Cellar/cromwell/30.2/libexec/cromwell-30.2.jar "$@"

Could it be possible to add a way to provide the config file in this case? Something like an environmental variable can be useful (e.g., export CROMWELL_CONFIG_FILE=/path/to/your.conf will pick up directly this in every run).

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