Bugs & Feature Requests
Known issues and requested enhancements


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WDL

These are the bug reports and feature requests (tagged "bug" and/or "enhancement") in the WDL development repository. If you have reported a bug and cannot find it in this list, let us know in the thread where you reported it.


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Cromwell

These are the bug reports and feature requests (tagged "Bug" and/or "User Requested Improvement") in the Cromwell development repository. If you have reported a bug and cannot find it in this list, let us know in the thread where you reported it.


Large input files copied into execution bucket
Task validation only happens at job execution time
Cromwell cyclic dependency error in 30.1, fine in 29
File issue cause cromwell to enter funny state where workflow status is running, but it has stalled indefinitely.
GCR Docker-Content-Digest v2 not available for all images
Possible infinite retires in AsyncBackendJobExecutionActor
Confirm LOG_MODE pretty and standard are overridable via properties
Expressions in array accesses won't parse
Cromwell left workflow running even though it could make no more progress.
Race condition while checking stderr
Need to validate that file inputs from JSON are valid paths
File of "" in your input causes cromwell to hang
Circular dependencies unchecked
Failed GCS read during output evaluation not retried, fails workflow
Specifying an invalid zone causes infinite retries
write_lines(Array[File]) creates file with unlocalized file paths
Timing Diagram displays "(" instead of chart
Recursive subworkflow calls don't work
json containing tabs is rejected
Scatter task with ~2000 jobs runs out-of-memory due to database flush
WDL with undeclared variable passes validation
Options for Womtool inputs generation
Allow for overriding individual steps in a workflow
Erroneous error message creating womgraph
Request: make possible to configure cromwell using brew wrapper script
womtool does not detect missing inputs for sub-workflow
Feature request: Dirt simple error message
Permission problem with LSF configuration
RFE: call_caching_placeholder.txt should contain details of the cache hit.
Cromwell quickstart
Submit to cromwell from CLI
Optional docker string
Cromwell swagger is woefully out of date
wdltool should report optionals (even with defaults)
Cromwell can fail to respond to metadata requests on large workflows
Working directory path with space and parentheses
Max and Min functions
add toLowerCase and toUperCase as wdl functions
Enable global workflow variables inside tasks
optional per-task for docker enviroment
Timing diagram cannot differentiate between running and queued on SGE backend
Provide mechanism to disallow Cromwell starting if migration necessary
Document expandSubworkflows in metadata
putting everything to one zip archive
Cromwell client woefully incomplete
Limit resources on local backend
Docs and Error messaging for Pair access
WDL feature request : autosize drive