Bugs & Feature Requests
Known issues and requested enhancements


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WDL

These are the bug reports and feature requests (tagged "bug" and/or "enhancement") in the WDL development repository. If you have reported a bug and cannot find it in this list, let us know in the thread where you reported it.


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Cromwell

These are the bug reports and feature requests (tagged "Bug" and/or "User Requested Improvement") in the Cromwell development repository. If you have reported a bug and cannot find it in this list, let us know in the thread where you reported it.


Cromwell cyclic dependency error in 30.1, fine in 29
File issue cause cromwell to enter funny state where workflow status is running, but it has stalled indefinitely.
GCR Docker-Content-Digest v2 not available for all images
Possible infinite retires in AsyncBackendJobExecutionActor
Confirm LOG_MODE pretty and standard are overridable via properties
Expressions in array accesses won't parse
Cromwell left workflow running even though it could make no more progress.
Race condition while checking stderr
Need to validate that file inputs from JSON are valid paths
File of "" in your input causes cromwell to hang
Circular dependencies unchecked
Failed GCS read during output evaluation not retried, fails workflow
Specifying an invalid zone causes infinite retries
write_lines(Array[File]) creates file with unlocalized file paths
Timing Diagram displays "(" instead of chart
Recursive subworkflow calls don't work
Decouple Googleisms and labels
Feature request: Dirt simple error message
RFE: call_caching_placeholder.txt should contain details of the cache hit.
Cromwell quickstart
Submit to cromwell from CLI
Optional docker string
Cromwell swagger is woefully out of date
wdltool should report optionals (even with defaults)
Cromwell can fail to respond to metadata requests on large workflows
Working directory path with space and parentheses
Max and Min functions
add toLowerCase and toUperCase as wdl functions
Enable global workflow variables inside tasks
optional per-task for docker enviroment
Timing diagram cannot differentiate between running and queued on SGE backend
Provide mechanism to disallow Cromwell starting if migration necessary
Document expandSubworkflows in metadata
putting everything to one zip archive
Cromwell client woefully incomplete
Limit resources on local backend
Docs and Error messaging for Pair access
WDL feature request : autosize drive
WDL request: globbing output directory and know paths
Add ability to take dockerhub account information in Option json
adding clean to REST API
Saving mistakes in Cromwell logs
Upgrade preempted VMs if killed after 24 hours
Feature request: option to check that all external input files are reachable up front
Add ability to get count of results returned by query endpoint without full results
Error message unclear for invalid options file, Cromwell 24