Terra workflow for C4 A/B analysis (WDL and demonstration workspace)
We have released a new public workspace in Terra that provides a demonstration and reusable example of analyzing C4 copy number on the 1000 Genomes high coverage data.
The demonstration workspace is available here (a Terra login is required): https://app.terra.bio/#workspaces/mccarroll-genomestrip-terra/C4AB_Analysis
This workflow is an updated version of the methods used in the recent preprint from our lab by Nolan Kamitaki: Complement component 4 genes contribute sex-specific vulnerability in diverse illnesses
Online documentation: Genome STRiP 2.0 Documentation
This set of online documentation is new (and is updated for Genome STRiP 2.0). Some of the older Genome STRiP utilities are not yet included in the new documentation set.
Older Genome STRiP documentation for version 1.0x (which includes some of the missing utilities) is available on the GATK Forum: Genome STRiP 1.x documentation.
FAQ: Genome STRiP FAQ
Cookbook: Genome STRiP Cookbook
Step-by-step recipes for performing common analysis tasks.
Tutorials: Genome STRiP Tutorials
We monitor the Genome STRiP topic on the GATK Forum and respond to questions there.
User support is also provided through the svtoolkit-help mailing list at sourceforge.
Please check the archives before posting a question to firstname.lastname@example.org